Description
A popular set of R packages developed and maintained by the Trapnell Lab, meant to infere developmental trajectories by comparing parameters between individual cells, and clustering based on those states. Now updated to Monocle v2, with autogating of states, and differential expression analysis.
Algorithm Authors
Cole Trapnell
Plugin Developers
Miguel Velazquez-Palafox
Ian Taylor
Dylan Hinson
Citation
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Categories
Clustering
Visualization
Quality Control
Dimensionality Reduction